Publications

Evidence for common ancestry among viruses isolated from wild birds in Beringia and highly pathogenic intercontinental reassortant H5N1 and H5N2 influenza A viruses, Andrew M. Ramey, Andrew B. Reeves, Joshua L. TeSlaa, Sean Nashold, Tyrone Donnelly, Justin Bahl, Jeffrey S. Hall, Infection, Genetics and Evolution,Volume 40, 2016, Pages 176-185,ISSN 1567-1348, https://doi.org/10.1016/j.meegid.2016.02.035.

Ecosystem interactions underlie the spread of avian influenza A viruses with pandemic potential. J Bahl, TT Pham, NJ Hill, ITM Hussein, EJ Ma, BC Easterday, RA Halpin, et al. PLoS Pathogens 12 (5), e1005620

Broadly-reactive neutralizing and non-neutralizing antibodies directed against the H7 influenza virus hemagglutinin reveal divergent mechanisms of protection. GS Tan, PE Leon, RA Albrecht, I Margine, A Hirsh, J Bahl, F Krammer. PLoS pathogens 12 (4), e1005578

Temporal, geographic, and host distribution of avian paramyxovirus 1 (Newcastle disease virus), Kiril M. Dimitrov, Andrew M. Ramey, Xueting Qiu, Justin Bahl, Claudio L. Afonso, Infection, Genetics and Evolution,Volume 39, 2016, Pages 22-34, ISSN 1567-1348, https://doi.org/10.1016/j.meegid.2016.01.008.

Influenza A Virus Diversity and Transmission in Exhibition Swine, Tatiana Baranovich, Justin Bahl, The Journal of Infectious Diseases, Volume 213, Issue 2, 15 January 2016, Pages 169–170, https://doi.org/10.1093/infdis/jiv400

Inference of Japanese encephalitis virus ecological and evolutionary dynamics from passive and active virus surveillance, Truc T. Pham, Shengli Meng, Yan Sun, Wenli Lv, Justin Bahl, Virus Evolution, Volume 2, Issue 1, January 2016, vew009, https://doi.org/10.1093/ve/vew009

Dengue subgenomic RNA binds TRIM25 to inhibit interferon expression for epidemiological fitness. Gayathri Manokaran et al., Science350,217-221(2015). DOI:10.1126/science.aab33

Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: global and local transmission dynamics. Duvvuri, V., Granados, A., Rosenfeld, P. et al. Sci Rep 5, 14268 (2015). https://doi.org/10.1038/srep14268

Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune-driven selection. Su, Y., Bahl, J., Joseph, U. et al. Nat Commun 6, 7952 (2015). https://doi.org/10.1038/ncomms8952

Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data. NS Lewis, JH Verhagen, Z Javakhishvili, CA Russell, P Lexmond, et al. Journal of General Virology 96 (8), 2050-2060

Influenza A viruses of swine circulating in the United States during 2009–2014 are susceptible to neuraminidase inhibitors but show lineage-dependent resistance to adamantanes, Tatiana Baranovich, Justin Bahl, Bindumadhav M. Marathe, Marie Culhane, Evelyn Stigger-Rosser, Daniel Darnell, Bryan S. Kaplan, James F. Lowe, Richard J. Webby, Elena A. Govorkova, Antiviral Research, Volume 117, 2015, Pages 10-19, ISSN 0166-3542 https://doi.org/10.1016/j.antiviral.2015.02.004

Mammalian adaptation of influenza A(H7N9) virus is limited by a narrow genetic bottleneck. Zaraket, H., Baranovich, T., Kaplan, B. et al. Nat Commun 6, 6553 (2015). https://doi.org/10.1038/ncomms7553

Adaptation of pandemic H2N2 influenza A viruses in humans. Joseph U, Linster M, Suzuki Y, Krauss S, Halpin RA, Vijaykrishna D, Fabrizio TP, Bestebroer TM, Maurer-Stroh S, Webby RJ, Wentworth DE, Fouchier RA, Bahl J, Smith GJ; CEIRS H2N2 Working Group. J Virol. 2015 Feb;89(4):2442-7. doi: 10.1128/JVI.02590-14. Epub 2014 Dec 10. Erratum in: J Virol. 2015 Apr;89(8):4706. doi: 10.1128/JVI.00259-15.

Epistatic interactions between neuraminidase mutations facilitated the emergence of the oseltamivir-resistant H1N1 influenza viruses. Duan, S., Govorkova, E., Bahl, J. et al. Nat Commun 5, 5029 (2014). https://doi.org/10.1038/ncomms6029

Geochronology and isotope geochemistry of Eocene dykes intruding the Ladakh Batholith, A.R. Heri, J.C. Aitchison, J.A. King, J. Bahl, I.M. Villa, Lithos, Volumes 212–215,2015, Pages 111-121, ISSN 0024-4937, https://doi.org/10.1016/j.lithos.2014.11.001

Genomewide Analysis of Reassortment and Evolution of Human Influenza A(H3N2) Viruses Circulating between 1968 and 2011. Westgeest KB, Russell CALin XSpronken MIJ, Bestebroer TM, Bahl J, van Beek R, Skepner E, Halpin RA, de Jong JC, Rimmelzwaan GF, Osterhaus ADME, Smith DJWentworth DEFouchier RAM, de Graaf M. 2014. J Virol 88:.https://doi.org/10.1128/jvi.02163-13